Publications

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2012

[18] Vacic V, Iakoucheva LM. Disease mutations in disordered regions - exception to the rule? Molecular BioSystems (themed issue on intrinsically disordered proteins). 8(1):27-32. (2012)

2011

[17] Malhotra D, McCarthy S, Michaelson JJ, Vacic V, Burdick KE, Yoon S, Cichon S, Corvin A, Gary S, Gershon ES, Gill M, Karayiorgou M, Kelsoe JR, Krastoshevsky O, Krause V, Leibenluft E, Levy DL, Makarov V, Bhandari A, Malhotra AK, McMahon FJ, Nothen MM, Potash JB, Rietschel M, Schulze TG, Sebat J. High frequencies of de novo CNVs in bipolar disorder and schizophrenia. Neuron. 72(6):951-63. (2011)

[16] Vacic V, McCarthy SE, Malhotra D, Murray F, Cho HH, Peoples A, Makarov V, Yoon S, Bhandari A, Corominas R, Iakoucheva LM, Krastoshevsky O, Krause V, Larach Walters V, Welsh DK, Craig D, Kelsoe JR, Gershon ES, Leal SM, Dell Aquila M, Morris DW, Gill M, Corvin A, Insel PA, McClellan J, King MC, Karayiorgou M, Levy DL, DeLisi LE, and Sebat J. Duplications of the neuropeptide receptor VIPR2 confer significant risk for schizophrenia. Nature. 471(7339):499-503. (2011) Featured on cover page, GenomeWeb, Science Daily.

2010

[15] Radivojac P, Vacic V, Haynes C, Cocklin RR, Mohan A, Heyen JW, Goebl MG, and Iakoucheva LM. Identification, analysis and prediction of protein ubiquitination sites. Proteins: Structure, Function, and Bioinformatics. 78(2):365-380. (2010) web site

[14] Vacic V, Iakoucheva LM, Lonardi S, and Radivojac P. Graphlet kernels for prediction of functional residues in protein structures. Journal of Computational Biology. 17(1):55-72. (2010) web site

2009

[13] Bogunovic D, O’Neill DW, Belitskaya-Levy I, Vacic V, Yu Y-L, Adams S, Darvishian F, Berman R, Shapiro R, Pavlick AC, Lonardi S, Zavadil J, Osman I, and Bhardwaj N. Immune profile and mitotic index of metastatic melanoma lesions enhance clinical staging in predicting patient survival. Proceedings of the National Academy of Sciences. 106(48):20429-34. (2009) Featured in U.S. News & World Report

[12] McCarthy SE, Makarov V, Kirov G, Addington A, McClellan J, Yoon S, Perkins D, Dickel DE, Kusenda M, Krastoshevsky O, Krause V, Kumar RA, Grozeva D, Malhotra D, Walsh T, Zackai EH, Kaplan P, Ganesh J, Krantz ID, Spinner NB, Roccanova P, Bhandari A, Pavon K, Lakshmi B, Leotta A, Kendall J, Lee Y, Vacic V, Gary S, Iakoucheva L, Crow TJ, Christian SL, Lieberman J, Stroup S, Lehtimäki T, Puura K, Haldeman-Englert C, Pearl J, Goodell M, Willour VL, DeRosse P, Steele J, Kassem L, Wolff J, Chitkara N, McMahon F, Malhotra AK, Potash JB, Schulze T, Nöthen MM, Cichon S, Rietschel M, Leibenluft E, Kustanovich V, Lajonchere CM, Sutcliffe JS, Skuse D, Gill M, Gallagher L, Mendell NR, Wellcome Trust Case Control Consortium, Craddock N, Owen MJ, O’Donovan MC, Shaikh TH, Susser E, DeLisi LE, Sullivan PF, Deutsch CK, Rapoport J, Levy DL, King MC, and Sebat J. Microduplications of 16p11.2 are associated with schizophrenia. Nature Genetics. 41:1223-7. (2009) Featured on GenomeWeb

2008

[11] Dunker AK, Oldfield CJ, Meng J, Romero P, Yang JY, Chen JW, Vacic V, Obradovic Z, and Uversky VN. The unfoldomics decade: an update on intrinsically disordered proteins. BMC Genomics. 9(S2):S1. (2008)

[10] Jin H, Vacic V, Girke T, Lonardi S, and Zhu J-K. Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis. BMC Molecular Biology. 9:6. (2008)

[9] Vacic V, Jin H, Zhu J-K, and Lonardi S. A probabilistic method for small RNA flowgram matching. Pacific Symposium on Biocomputing, PSB'08, 13:75-86. (2008) slides web site

2007

[8] Fu Z, Chen X, Vacic V, Nan P, Zhong Y, and Jiang T. MSOAR: a high-throughput ortholog assignment system based on genome rearrangement. Journal of Computational Biology. 14(9):1160-75. (2007) web site

[7] Vacic V, Uversky VN, Dunker AK, and Lonardi S. Composition Profiler: a tool for discovery and visualization of amino acid composition differences. BMC Bioinformatics. 8:211. (2007) web site

[6] Vacic V, Oldfield CJ, Mohan A, Radivojac P, Cortese MS, Uversky VN, and Dunker AK. Characterization of molecular recognition features, MoRFs, and their binding partners. Journal of Proteome Research. 6(6):2351-66. (2007)

[5] Sickmeier M, Hamilton JA, LeGall T, Vacic V, Cortese MS, Tantos A, Szabo B, Tompa P, Chen J, Uversky VN, Obradovic Z, and Dunker AK. DisProt: the database of disordered proteins. Nucleic Acids Research. 35:D786-93. (2007). web site

2006

[4] Mohan A, Oldfield CJ, Radivojac P, Vacic V, Cortese MS, Dunker AK, and Uversky VN. Analysis of molecular recognition features (MoRFs). Journal of Molecular Biology, 362(5):1043-59. (2006)

[3] Vacic V, Iakoucheva LM, and Radivojac P. Two Sample Logo: a graphical representation of the differences between two sets of sequence alignments. Bioinformatics, 22(12):1536-7. (2006) web site

[2] Fu Z, Chen X, Vacic V, Nan P, Zhong Y, and Jiang T. A parsimony approach to genome-wide ortholog assignment. ACM Annual Conference on Research in Computational Molecular Biology, RECOMB'06, Venice, Italy. (2006)

2005

[1] Vucetic S, Obradovic Z, Vacic V, Radivojac P, Peng K, Iakoucheva LM, Cortese MS, Lawson JD, Brown CJ, Sikes JG, Newton CD, and Dunker AK. Disprot: a database of protein disorder. Bioinformatics, 21(1): 137-140. (2005)

Coauthor Index

Lilia M. Iakoucheva	[1] [3] [12] [14] [15] [16] [18]
A. Keith Dunker	[1] [4] [5] [6] [7] [11]
Predrag Radivojac	[1] [3] [4] [6] [14] [15]
Stefano Lonardi	[7] [9] [10] [13] [14]
Vladimir N. Uversky	[4] [5] [6] [7] [11]
Abhishek Bhandari	[12] [16] [17]
Marc S. Cortese	[1] [4] [5] [6]
Michael Gill	[12] [16] [17]
Olga Krastoshevsky	[12] [16] [17]
Verena Krause	[12] [16] [17]
Deborah Levy	[12] [16] [17]
Vladimir Makarov	[12] [16] [17]
Dheeraj Malhotra	[12] [16] [17]
Shane E. McCarthy	[12] [16] [17]
Amrita Mohan	[4] [6] [15]
Zoran Obradovic	[1] [5] [11]
Christopher J. Oldfield	[4] [6] [11]
Jonathan Sebat	[12] [16] [17]
Seungtai Yoon	[12] [16] [17]
Xin Chen	[2] [8]
Sven Cichon	[12] [17]
Aiden Corvin	[16] [17]
Lynn DeLisi	[12] [16]
Zheng Fu	[2] [8]
Sydney Gary	[12] [17]
Tao Jiang	[2] [8]
Hailing Jin	[9] [10]
Maria Karayiorgou	[16] [17]
John R. Kelsoe	[16] [17]
Mary-Claire King	[12] [16]
Ellen Leibenluft	[12] [17]
Jon McClellan	[12] [16]
Anil Malhotra	[12] [17]
Francis McMahon	[12] [17]
Peng Nan	[2] [8]
Markus Nöthen	[12] [17]
James Potash	[12] [17]
Marcella Rietschel	[12] [17]
Thomas Schulze	[12] [17]
Yang Zhong	[2] [8]
Jian-Kang Zhu	[9] [10]
Sylvia Adams	[13]
Anjene Addington	[12]
Ilana Belitskaya-Levy	[13]
Russell Berman	[13]
Nina Bhardwaj	[13]
Dusan Bogunovic	[13]
Celeste J. Brown	[1]
Katherine E. Burdick	[17]
Jake Chen	[5]
Jessica Walton Chen	[11]
Nisha Chitkara	[12]
Hsun-Hua Cho	[16]
Susan Christian	[12]
Ross R. Cocklin	[15]
Roser Corominas	[16]
Nick Craddock	[12]
Timothy Crow	[12]
Farbod Darvishian	[13]
Pamela DeRosse	[12]
Curtis Deutsch	[12]
Diane Dickel	[12]
Louise Gallagher	[12]
Jaya Ganesh	[12]
Elliot S. Gershon	[17]
Thomas Girke	[10]
Mark G. Goebl	[15]
Meredith Goodell	[12]
Detelina Grozeva	[12]
Chad Haldeman-Englert	[12]
Justin A. Hamilton	[5]
Chad Haynes	[15]
Joshua W. Heyen	[15]
Paul A. Insel	[16]
Paige Kaplan	[12]
Layla Kassem	[12]
Jude Kendall	[12]
George Kirov	[12]
Ian Krantz	[12]
Ravinesh Kumar	[12]
Mary Kusenda	[12]
B. Lakshmi	[12]
Verónica Larach Walters	[16]
J. David Lawson	[1]
Yoon-Ha Lee	[12]
Tanguy LeGall	[5]
Terho Lehtimäki	[12]
Anthony Leotta	[12]
Jeffrey Lieberman	[12]
Nancy Mendell	[12]
Jingwei Meng	[11]
Jacob J. Michaelson	[17]
Derek W. Morris	[16]
Fiona Murray	[16]
Crystal D. Newton	[1]
Michael O'Donovan	[12]
David W. O’Neill	[13]
Iman Osman	[13]
Michael Owen	[12]
Anna C. Pavlick	[13]
Kevin Pavon	[12]
Justin Pearl	[12]
Kang Peng	[1]
Aine Peoples	[16]
Diana Perkins	[12]
Judith Rapoport	[12]
Patricia Roccanova	[12]
Pedro Romero	[11]
Richard Shapiro	[13]
Tamim Shaikh	[12]
Megan Sickmeier	[5]
Jason G. Sikes	[1]
David Skuse	[12]
Nancy Spinner	[12]
Joe Steele	[12]
T. Scott Stroup	[12]
Patrick Sullivan	[12]
Ezra Susser	[12]
James Sutcliffe	[12]
Beata Szabo	[5]
Agnes Tantos	[5]
Peter Tompa	[5]
Slobodan Vucetic	[1]
Tom Walsh	[12]
Virginia Wilour	[12]
Jessica Wolff	[12]
Jack Y. Yang	[11]
Yi-Lo Yu	[13]
Elaine Zackai	[12]
Jiri Zavadil	[13]

Venue Index

Bioinformatics	[1] [3]
Journal of Computational Biology	[8] [14]
BMC Bioinformatics	[7]
BMC Genomics	[11]
BMC Molecular Biology	[10]
Journal of Molecular Biology	[4]
Journal of Proteome Research	[6]
Molecular BioSystems	[18]
Nature	[16]
Nature Genetics	[12]
Neuron	[17]
Nucleic Acids Research	[5]
Pacific Symposium on Biocomputing, PSB	[9]
Proceedings of the National Academy of Sciences	[13]
Proteins: Structure, Function, and Bioinformatics	[15]
ACM Annual Conference on Research in Computational Molecular Biology, RECOMB	[2]