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E.Y. Harris, N. Ponts, K. Le Roch, S. Lonardi, "BRAT-BW: Efficient and accurate mapping of bisulfite-treated reads", Bioinformatics, 2012, doi: 10.1093/bioinformatics/bts264
E.Y.Harris, N. Ponts, K. G. Le Roch, S. Lonardi, "Chromatin-driven de novo discovery of DNA binding motifs in the human malaria parasite." BMC Genomics, 2011, doi:10.1186/1471-2164-12-601.
E.Y.Harris, N. Ponts, A. Levchuk, K. Le Roch, S. Lonardi, "BRAT: Bisulfite-treated Reads Analysis Tool", Bioinformatics, Bioinformatics Advance Access published online on December 22, 2009, doi:10.1093/bioinformatics/btp706 .
Nadia Ponts*, Elena Y. Harris*, Jacques Prudhomme, Ivan Wick, Colleen Eckhardt-Ludka, Glenn R. Hicks, Gary Hardiman, Stefano Lonardi, Karine G. Le Roch, "Nucleosome landscape and control of transcription in the human malaria parasite." Genome Research. Published in Advance January 6, 2010, doi: 10.1101/gr.101063.109 .
N. Ponts, E. Y. Harris, S. Lonardi, K. G. Le Roch, "Nucleosome occupancy at transcription start sites in the human malaria parasite: A hard-wired evolution of virulence?" Infection, Genetics and Evolution. Published in August, 2010, doi:10.1016/j.meegid.2010.08.002 .
E. Y. Harris, T. Lecroq, G. Kucherov, S. Lonardi. "CPM’s 20th Anniversary: A Statistical Retrospective." CPM 2009 - Annual Symposium on Combinatorial Pattern Matching, pp.1-11, Lille, France, 2009, Proceedings.
N. Pokhriyal, N. Ponts, E. Y. Harris, K. G. Le Roch, S. Lonardi, "Novel Gene Discovery in the Human Malaria Parasite using Nucleosome Positioning Data." CSB 2010 - Computational Systems Bioinformatics Conference, pp. 124-135, Stanford, CA, 2010, Proceedings.