Software
FastMEDUSA is a parallel program to infer gene regulatory networks from gene expression and promoter sequences. It is the parallelized version of MEDUSA (Kundaje, et al. 2008 Plos Comp. Bio.)
FMTP is a software tool to compute the MTP of a physical map based purely on restriction fingerprint data (and the contigs). FMTP completely ignores the ordering of clones obtained by the physical map algorithm.
Compartmentalized assembler is a novel method for the assemlby of
high quality physical maps from fingerprinted clones. Our method
exploits the presence of genetic markers at the genomic level that
allows us to
pre-cluster the clones. For each cluster of clones, a local physical
map is first constructed. Then, all the individual maps are carefully
merged into the final physical map.