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Abhishek Mitra, Posdtdoc, UTMB at Galveston |
| I graduated with a Ph.D. from Dept. of CSE, UC Riverside, and am working as a Postdoc fellow (Bioinformatics) at
University of Texas Medical Branch, Galveston with my P.I. ->.
I work closely with Molecular biologists to help them analyze data from experiments that involve Next Generation Sequencing.
Some examples:
a) mapping fragile sites in a genome
b) identifying transcription factors from protein-dna interaction
c) identifying gene expression.
Our ideal computational objective for NGS data in a nutshell is: ``Analysis of Terabytes of raw data using Teraflop systems with Kilobytes of code and in a few Kilo seconds.''
Major areas that I am involved in include:
a) string matching
b) regex matching
c) multi-threading
d) GPU
e) statistical methods using GNU scientific library.
In my spare time I work, on correcting artifacts in ChIP-Seq input dna,
by using certain physical properties of dna.
Usually I use Linux, C++, boost libs, GSL, pthreads, Wikipedia, Matlab and R as tools.
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My Current Areas of Interest: |
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| Bioinformatics and Statistical Methods |
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| Next Generation Sequencing Data Analysis |
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| Strings, Regex, Algorithms and Large Scale Data Processing |
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| CPU, GPU, HPC, Cloud Computing and Linux |
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Prior areas of interest: |
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| Reconfigurable Computing with FPGAs |
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| Flash Memories and SSDs |
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| Wireless and Sensors |
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| Embedded Systems |
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| Sample Research Statement: /2008 |
| Curriculum vitae |
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| Contact |
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| 301 University Blvd, UTMB, Galveston, TX, 77555-0647 |
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| Phone: 409-772-5400 (Lab) :: 951-254-2551 (Cell) |
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| Email: a b m i t r a()utmb<>edu |
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