@article{Vacic2011nat,
  author = "V. Vacic and S. E. McCarthy and D. Malhotra and F. Murray and H. H. Cho and A. Peoples and V. Makarov and S. Yoon and A. Bhandari and R. Corominas and L. M. Iakoucheva and O. Krastoshevsky and V. Krause and V. Larach Walters and D. K. Welsh and D. Craig and J. R. Kelsoe and E. S. Gershon and S. M. Leal and M. Dell Aquila and D. W. Morris and M. Gill and A. Corvin and P. A. Insel and J. McClellan and M-C. King and M. Karayiorgou and D. L. Levy and L. E. DeLisi and J. Sebat", 
  title = "Duplications of the neuropeptide receptor VIPR2 confer significant risk for schizophrenia",
  journal = "Nature",
  year = "2011",
  keywords = "schizophrenia, psychiatric genetics, VIPR2, copy number variation, CNV, 7q36.3",
  pmid="21346763"
}

@article{Radivojac2010psfb,
  author = "P. Radivojac and V. Vacic and C. Haynes and R. R. Cocklin and A. Mohan and J. W. Heyen and M. G. Goebl and L. M. Iakoucheva",
  title = "Identification, analysis and prediction of protein ubiquitination sites",
  journal = "Proteins: Structure, Function, and Bioinformatics",
  year = "2010",
  volume = "78",
  number = "2",
  pages = "365--80",
  keywords = "protein function, post-translational modifications, PTM, ubiquitination",
  pmid="19722269"
}

@article{Vacic2010jcb,
  author = "V. Vacic and L. M. Iakoucheva and S. Lonardi and P. Radivojac",
  title = "Graphlet kernels for prediction of functional residues in protein structures",
  journal = "Journal of Computational Biology",
  year = "2010",
  volume = "17",
  number = "1",
  pages = "55--72",
  keywords = "protein function, post-translational modifications, PTM, phosphorylation",
  pmid="20078397"
}

@article{Bogunovic2009pnas,
  author = "D. Bogunovic and D. W. O’Neill and I. Belitskaya-Levy and V. Vacic and Y-L. Yu and S. Adams and F. Darvishian and R. Berman and R. Shapiro and A. C. Pavlick and S. Lonardi and J. Zavadil and I. Osman and N. Bhardwaj",
  title = "Immune profile and mitotic index of metastatic melanoma lesions enhance clinical staging in predicting patient survival", 
  journal = "Proceedings of the National Academy of Sciences", 
  year= "2009",
  volume = "106",
  number = "48",
  pages = "20429--34",
  keywords = "melanoma, cancer, gene expression",
  pmid="19915147"
}

@article{McCarthy2009natgen,
  author = "S. E. McCarthy and V. Makarov and G. Kirov and A. Addington and J. McClellan and S. Yoon and D. Perkins and D. E. Dickel and M. Kusenda and O. Krastoshevsky and V. Krause and R. A. Kumar and D. Grozeva and D. Malhotra and T. Walsh and E. H. Zackai and P. Kaplan and J. Ganesh and I. D. Krantz and N. B. Spinner and P. Roccanova and A. Bhandari and K. Pavon and B. Lakshmi and A. Leotta and J. Kendall and Y. Lee and V. Vacic and S. Gary and L. Iakoucheva and T. J. Crow and S. L. Christian and J. Lieberman J and S. Stroup and T. Lehtimaki and K. Puura and C. Haldeman-Englert and J. Pearl and M. Goodell and V. L. Willour and P. DeRosse and J. Steele and L. Kassem and J. Wolff and N. Chitkara and F. McMahon and A. K. Malhotra and J. B. Potash and T. Schulze and M.M. Nothen and S. Cichon and M. Rietschel and E. Leibenluft and V. Kustanovich and C. M. Lajonchere and J. S. Sutcliffe and D. Skuse and M. Gill and L. Gallagher and N. R. Mendell and Wellcome Trust Case Control Consortium and N. Craddock and M. J. Owen and M. C. O’Donovan and T. H. Shaikh and E. Susser and L. E. DeLisi and P. F. Sullivan and C. K. Deutsch and J. Rapoport and D. L. Levy and M. C. King and and J. Sebat",
  title = "Microduplications of 16p11.2 are associated with schizophrenia",
  journal = "Nature Genetics",
  year= "2009",
  volume = "41",
  number = "",
  pages = "1223--7",
  keywords = "schizophrenia, psychiatric genetics, copy number variation, CNV, 16p11.2",
  pmid="19855392"
}

@article{Dunker2008bmcg,
  author = "A. K. Dunker and C. J. Oldfield and J. Meng and P. Romero and J. Y. Yang and J. W. Chen and V. Vacic and Z. Obradovic and V. N. Uversky",
  title = "The unfoldomics decade: an update on intrinsically disordered proteins",
  journal = "BMC Genomics",
  year = "2008",
  volume = "9",
  number = "S2",
  pages = "S1",
  keywords = "protein disorder",
  pmid = "18831774"
}

@article{Jin2008bmcmb,
  author = "H. Jin and V. Vacic and T. Girke and S. Lonardi and J-K. Zhu",
  title = "Small {RNA}s and the regulation of cis-natural antisense transcripts in {A}rabidopsis",
  journal = "BMC Molecular Biology",
  year = "2008",
  volume = "9",
  number = "",
  pages = "6",
  keywords = "small rna, rnai, naturally overlapping transcripts, arabidopsis",
  pmid="18194570"
}

@inproceedings{Vacic2008psb,
  author = "V. Vacic and H. Jin and J-K. Zhu and S. Lonardi",
  title = "A probabilistic method for small {RNA} flowgram matching",
  booktitle = "Proceedings of Pacific Symposium on Biocomputing",
  year = "2008",
  volume = "13",
  pages = "75--86",
  keywords = "small rna, rnai, 454 sequencing, profile matching",
  pmid="18229677"
}

@article{Fu2007jcb,
  author = "Z. Fu and X. Chen and V. Vacic and P. Nan and Y. Zhong and Jiang T",
  title = "{MSOAR}: a high-throughput ortholog assignment system based on genome rearrangement",
  journal = "Journal of Computational Biology",
  year = "2007",
  volume = "14",
  number = "9",
  pages = "1160--75",
  keywords = "comparative genomics, ortholog assignment",
  pmid="17990975"
}

@article{Vacic2007bmcbi,
  author = "V. Vacic and V. N. Uversky and A. K. Dunker and S. Lonardi",
  title = "Composition {P}rofiler: a tool for discovery and visualization of amino acid composition differences",
  journal = "BMC Bioinformatics",
  year = "2007",
  volume = "8",
  number = "",
  pages = "211",
  keywords = "sequence analysis, visual data mining",
  pmid="17578581"
}

@article{Vacic2007jpr,
  author = "V. Vacic and C. J. Oldfield and A. Mohan and P. Radivojac and M. S. Cortese and V. N. Uversky and A. K. Dunker",
  title = "Characterization of molecular recognition features, {MoRF}s, and their binding partners",
  journal = "Journal of Proteome Research",
  year = "2007",
  volume = "6",
  number = "6",
  pages = "2351--66",
  keywords = "protein disorder, interactions, folding and binding",
  pmid="17488107"
}

@article{Sickmeier2007nar,
  author = "M. Sickmeier and J. A. Hamilton and T. LeGall and V. Vacic and M. S. Cortese and A. Tantos and B. Szabo and P. Tompa and J. Chen and V. N. Uversky and Z. Obradovic and A. K. Dunker",
  title = "Dis{P}rot: the database of disordered proteins",
  journal = "Nucleic Acids Research",
  year = "2007",
  volume = "35",
  number = "",
  pages = "D786--93",
  keywords = "protein disorder, database",
  pmid="17145717"
}

@article{Mohan2006jmb,
  author = "A. Mohan and C. J. Oldfield and P. Radivojac and V. Vacic and M. S. Cortese and A. K. Dunker and V. N. Uversky",
  title = "Analysis of molecular recognition features ({MoRF}s)",
  journal = "Journal of Molecular Biology",
  year = "2006",
  volume = "362",
  number = "5",
  pages = "1043--59",
  keywords = "protein disorder, interactions, folding and binding",
  pmid="16935303"
}

@inproceedings{Fu2006recomb,
  author = "Z. Fu and X. Chen and V. Vacic and P. Nan and Y. Zhong and T. Jiang",
  title = "A parsimony approach to genome-wide ortholog assignment",
  booktitle = "Proceedings of ACM Annual Conference on Research in Computational Molecular Biology, RECOMB'06",
  year = "2006",
  pages = "",
  keywords = "comparative genomics, ortholog assignment",
  pmid=""
}

@article{Vacic2006bi,
  author = "V. Vacic and L. M. Iakoucheva and P. Radivojac",
  title = "Two {S}ample {L}ogo: a graphical representation of the differences between two sets of sequence alignments",
  journal = "Bioinformatics",
  year = "2006",
  volume = "22",
  number = "12",
  pages = "1536--7",
  keywords = "sequence analysis, visual data mining",
  pmid="16632492"
}

@article{Vucetic2005bi,
  author = "S. Vucetic and Z. Obradovic and V. Vacic and P. Radivojac and K. Peng and L. M. Iakoucheva and M. S. Cortese and J. D. Lawson and C. J. Brown and J. G. Sikes and C. D. Newton and A. K. Dunker",
  title = "Disprot: a database of protein disorder",
  journal = "Bioinformatics",
  year = "2005",
  volume = "21",
  number = "1",
  pages = "137--40",
  keywords = "protein disorder, database",
  pmid="15310560"
}