Selected Publications

WABI, 2017

BMC Bioinformatics, 2014

ISMB, 2012

Recent Publications

. ThIEF: Finding Genome-wide Trajectories of Epigenetics Marks. WABI, 2017.

Code link

. PuFFIN - a parameter-free method to build nucleosome maps from paired-end reads. BMC Bioinformatics, 2014.

Code PubMed

. DNA-encoded nucleosome occupancy is associated with transcription levels in the human malaria parasite Plasmodium falciparum.. BMC Genomics, 2014.


. Mechanisms of small RNA generation from cis-NATs in response to environmental and developmental cues.. Mol Plant, 2013.


. NOrMAL: Accurate Nucleosome Positioning using a Modified Gaussian Mixture Model. ISMB, 2012.

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Recent & Upcoming Talks

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  • CS141, Fall 2012

  • CS141, Spring 2013